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  1. Home
  2. Choose Fish and Shellfish Wisely
  3. Building Fish and Shellfish Advisory Programs
  4. Designing a Fish and Shellfish Contaminant Monitoring Program

Target Species and Size Classes

Target species are the fish and shellfish collected for the contaminant monitoring program. These species are distributed widely enough to allow for comparison of contaminant data across a wide geographic area. The age of a fish or shellfish correlates with its size and in many cases with the amount of contaminants in tissue. By collecting data on different size classes of target species, a more nuanced and accurate fish or shellfish consumption advisory can be developed.

On this page:
  • Creating a Target Species List
  • EPA Target Species List - Fish
  • EPA Target Species List - Shellfish
  • Size Classes

Target Species Selection and Size Class Considerations

Using the Integrated Approach

  • Collect enough fish to establish advisory values for the primary contaminant for 2-3 size classes, when combined with any data available from previous sampling.
  • Inventory existing sample data and collect additional samples for
    • Size class assessment
    • Confirmation of geographical extent
    • Species tissue contaminant levels
  • Select target species from commonly consumed species
    • Known to bioaccumulate high concentrations of contaminants
    • Distribution over a wide geographic area
  • Recommended target species
    • Inland freshwaters and Great Lakes – at least two fish species (including one bottom feeder) and one mollusk if appropriate for the waterbody
    • Marine/estuarine – at least two fish species (including one bottom feeder and one pelagic species) and one shellfish

Using the Multi-Phase Approach

Phase 1 - Select target species using the following criteria:

  • commonly consumed species
  • known to bioaccumulate high concentrations of contaminants
  • distributed over a wide geographic area
  • inland freshwaters and Great Lakes – at least two fish species (including one bottom-feeder) and one mollusk if appropriate for the waterbody
  • marine/estuarine – at least two fish species (including one bottom feeder and one pelagic species) and one shellfish

Phase 2 – resample target species at site where they were found to be contaminated in Phase 1

Phase 3 – Target species found to be contaminated should be resampled at additional sites in the waterbody; sample 2-3 size classes of the target species

If resources are limited, it may be more cost-effective to collect additional samples during Phase 1 and/or assess only size-specific (larger species) contaminant concentrations in the target species found to be contaminated.

Creating a Target Species List

Ideally, all fish and shellfish species consumed from a given waterbody by the local population should be monitored. However, not all programs have the resources to sample all routinely consumed fish and shellfish. If your jurisdiction is only able to collect a few species, select the most frequently consumed species. For fresh waters, consider selecting at least two fish species (including one bottom feeder) as primary target species and one mollusk if appropriate for the waterbody. For marine/estuarine waters, consider selecting at least two fish species (including one bottom feeder and one pelagic species), one mollusk, and one crustacean as appropriate for local conditions. Alternate target species should be identified and included in the sampling only if a primary species is not caught.

You can use the EPA target species list and supplement it with or substitute other more appropriate species for your sampling location. Local fisheries biologists, with knowledge of site-specific fisheries and human consumption patterns, should be consulted when selecting target species for use in fish contaminant monitoring programs within their jurisdiction.

EPA Target Species List - Fish

Download as an Excel file:  EPA Target Species List – Fish (xlsx) (42.72 KB)

The U.S. Environmental Protection Agency developed the target fish species list to provide guidance to fish monitoring programs on species commonly consumed by the general population. The EPA selected these species as a representative list using state, territory, and Tribal input on currently monitored fish species. This is a thorough, but not an all-inclusive list of target species. The program manager and field sampling staff should identify primary and alternate target species. The target species list should be based on the selection considerations:

  1. Commonly caught and consumed locally; commercial, recreational, or subsistence value
  2. Abundant, easy to capture, and large enough to provide adequate tissue samples for chemical analyses Sample Type Fish and Sample Type Shellfish
  3. Potential to bioaccumulate contaminants if present
  4. Easy to identify taxonomically
  5. Wide geographic distribution

These considerations provide a reliable comparison of sampling information and the magnitude and geographic extent of contamination can be assessed. Then it is possible to cost-effectively compare contaminant concentrations in waterbodies and prioritize sites where tissue contaminant levels are a risk to human health.

Fish species with these following characteristics are generally not acceptable target species:

  1. Not consumed by humans, including forage species that are small in size
  2. Threatened and endangered species – shouldn’t be fished or consumed by humans
  3. Herbivorous fish – no commercial fisheries support their consumption, cannot be caught by hook and line since they eat algae
  4. Limited geographic distributions

The following types of fish are not typically target species, but there are some examples on the EPA’s target species list. The study objectives should be considered before accepting or rejecting these fish; however, these fish could still be representative of potential health risks to fishers or consumers who harvest them.

  1. Migratory Fish Species
  2. Stocked Fish Species
  3. Invasive Species

EPA Target Species List - Shellfish

Download as an Excel file:  EPA Target Species List – Shellfish (xlsx) (17 KB)

The target shellfish species list contains species that have commercial, recreation and subsistence value in coastal areas of the U.S. They also have the potential to bioaccumulate contaminants and are monitored for pathogens and HAB biotoxins as required by the National Shellfish Sanitation Program.

Bivalve mollusks (e.g., oysters, mussels, scallops, and clams) are filter feeders that accumulate contaminants directly from the water column or via ingestion of contaminants adsorbed to phytoplankton, detritus, and sediment particles. Bivalves bioaccumulate heavy metals (Cunningham, 1979) and polycyclic aromatic hydrocarbons (PAHs) and other organic compounds (Phillips, 1980; NOAA, 1987) and, because they are sessile, they may reflect local contaminant concentrations more accurately than more mobile crustacean or finfish species.

Three bivalve species—the blue mussel (Mytilus edulis), the California mussel (Mytilus californianus), and the American oyster (Crassostrea virginica)—are recommended as target species as they are known to bioaccumulate a variety of environmental contaminants (Phillips, 1988). The wide distribution of these three species makes them useful for comparison within a state or between states sharing coastal waters. Because these three species meet all of the selection criteria, they are recommended as target species for use in geographic areas in which they occur.

In addition, several species of edible clams were added to the various estuarine/marine target species lists based on recommendations received from specific state and regional fisheries experts.

Crustaceans are also recommended as target species in states, territories or tribes where they are commonly consumed for estuarine/marine sampling sites. Many crustaceans are bottom-dwelling and bottom-feeding predator and/or scavenger species that are good indicators of contaminants that may be biomagnified through several trophic levels of the food web.

Size Classes

The age of a fish or shellfish correlates with its size. Size is determined by measuring the length of fish and most shellfish or the width for crabs. Some contaminants bioaccumulate in tissue and therefore, the older and larger the organism, the higher the contaminant concentration and potential harm to consumers.

To determine an accurate and not overly conservative fish or shellfish consumption advisory, it is recommended that two or three size classes of legally harvestable size should be included in the data collection. The size class parameters (length categories) are dependent upon the size range of target species caught in the field. A sample of 10 individuals is generally sufficient to determine whether a relationship between sizes and contaminant concentration exists. A regression analysis can then be used to set a size threshold, that relates to a contaminant concentration, for an advisory.

With size class data, there may be a restriction on larger (more contaminated) organisms and no restriction on smaller organisms (less contaminated) of the same species. Advisory programs can tailor an advisory to protect human health and still allow use of the fishery resource.

The relationship between increasing size and contaminant tissue concentration observed for some freshwater finfish species may be much less evident in estuarine and marine fish species. Some estuarine and marine species migrate as they mature and this may change their contaminant exposure. Larger fish may not necessarily have a significantly greater level of contamination and thus, class size distinctions may not be necessary for a fishing advisory.

Summary

In this section, you have:

  • Created a target species list.
    • In freshwater: at least 2 fish (including 1 bottom-feeder) and 1 mollusk if appropriate.
    • In marine and estuarine waters: at least 2 fish species (1 bottom-feeder and 1 pelagic), 1 mollusk and 1 crustacean if appropriate.
  • Identified alternate target species.
  • Decided whether to use size classes for any target species.

Migratory Fish Species

The EPA recommends focusing on the fish consumed in your jurisdiction. Some fish species migrate between fresh and salt waters to complete various stages of their lifecycle. These species may bioaccumulate chemicals in fresh waters, salt waters, or both. Since they migrate, they may or may not bioaccumulate chemicals at the same rate as non-migratory species, depending on the water quality of the waterbodies. Several migratory species (Pacific Salmon Oncohynchus tshawytscha, Striped Bass Morone saxatilis, etc.) are included on the EPA target species list. Migratory fish species tissue analyses may result in a fish consumption advisory; however, contamination origin may not be attributed to the waterbody in which the species was caught.

Stocked Fish Species

The EPA recommends selecting resident fish as the primary target species. Fish raised in a hatchery and released into a waterbody are considered stocked fish. Stocked fish can include natural species, such as various trout species, as well as hybrid fish species. Fish are stocked in U.S. waterbodies for recreational fishers. The contaminant levels in these fish may be indicative of the waterbody in which they were reared, not the waterbody in which they were stocked and caught. However, if characterization of contaminant levels at a particular sampling location is the objective, stocked fish could be collected within the allowable size limit.

Invasive Species

Invasive species have impacted many U.S. waterbodies altering food webs and disrupting ecological function. The EPA does not encourage the distribution and propagation of invasive species for recreational fishing; however, if local jurisdictions are encouraging people to consume invasive species, they should be considered for target species selection. Species like the Northern Snakehead Channa argus, Blue Catfish Ictalurus furcatus, Lionfish Pterois volitans, and Silver Carp Hypophthalmichthys moltrix, should be killed (and consumed if desired) when caught. The EPA includes these notable invasive species on the target species list.

Collecting one composite sample for each of three size classes of each target species.

Option 1 provides additional information on size-specific levels of contamination that may allow states to issue an advisory for only the most contaminated size classes while allowing other size classes of the target species to remain open to fishing. The state could analyze the composite sample from the largest size class first. If any screening values (SVs) are exceeded, analysis of the smaller size class composite samples could be conducted. This option, however, does not provide any additional information for estimating the variability of the contamination level in any specific size class. To obtain information for estimating the variability of the contamination level in the target species, states could separately analyze each individual fish specimen in any composite that exceeded the SVs. This option of analyzing individual fish within a composite sample is more resource-intensive with respect to analytical costs but is currently used by some Great Lakes states.

Collecting replicate composite samples for each target species

Option 2 provides additional statistical power that would allow states to estimate the variability of contamination levels within the one size class sampled; however, it does not provide information on size-specific contamination levels.

Collecting replicate composite samples for each of three size classes of each target species.

Option 3 provides both additional information on size-specific contamination levels and additional statistical power to estimate the variability of the contaminant concentrations in each of three size classes of the target species. If resources are limited, the state could analyze the replicate samples for the largest size class first; if the screening values are exceeded, analysis of the smaller size class composite samples could then be conducted.

Choose Fish and Shellfish Wisely

  • Should I Be Concerned about Eating Fish and Shellfish?
  • EPA-FDA Advice about Eating Fish and Shellfish
  • Eat Fish and Shellfish in a Healthy Way
  • How Do I Know if a Fish I Caught is Contaminated?
  • What the EPA Does to Protect You From Contaminated Fish and Shellfish
  • Technical Resources and Studies
  • Building Fish and Shellfish Advisory Programs
    • Designing a Fish and Shellfish Contaminant Monitoring Program
      • Integrated Approach Monitoring Strategy
      • Multi-phase Approach Monitoring Strategy
      • Sampling Sites
      • Target Species and Size Classes
      • Target Contaminants
      • Sampling Times and Frequency
      • Fish Sample Types
      • Shellfish Sample Types
      • Quality Assurance and Quality Control
      • Sample Analysis
    • In the Field - Collecting and Handling Samples
      • Sample Collection
      • Sample Handling
    • In the Lab - Processing and Analyzing Samples
      • Receiving Samples
      • Processing Samples
      • Analytical Methods
      • Quality Assurance and Quality Control
      • Data Verification, Reporting and Validation
    • Analyzing Data and Calculating the Consumption Limits
    • Developing a Fish and/or Shellfish Advisory
Contact Us about Fish and Shellfish Consumption
Contact Us to ask a question, provide feedback, or report a problem.
Last updated on December 23, 2024
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