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Headwater Streams Studies

Stream in the woods

Headwater streams are the smallest parts of river and stream networks, but make up the majority of river miles in the United States. They are the part of rivers furthest from the river's endpoint or confluence with another stream. Many headwater streams have been lost or altered due to human activities such as urbanization and agriculture, and this can impact species and water quality downstream.

Watershed managers have had little guidance to help protect headwaters or assess their condition. Because there are so many headwater streams, monitoring all of them for health and permanence is impractical. Therefore, other methods are needed.

EPA ecological exposure scientists developed tools for assessing the quality and permanence of headwater streams to provide guidance for regional, Tribal and state agencies in protecting these precious resources. Many headwater streams are prone to natural drying because they lack year-round connections to groundwater and don’t have permanent flow. This can make it difficult or impossible to use traditional methods of stream health assessment.

To gather information for the development of these assessment tools, EPA scientists conducted a pilot study in four forests in many areas of the United States. These pilots focused on developing indicators of headwater permanence and health — including environmental indicators and living organism indicators. Environmental indicators include rock, water, soil, and chemical features of forested headwater streams. Living organism indicators include organisms that live in these streams such as algae, bryophytes (mosses and liverworts), invertebrates (insects, worms, snails) and amphibians (salamanders and frogs).

Researchers produced Field Operations Manual for Assessing the Hydrologic Permanence and Ecological Condition of Headwater Streams (pdf) (6.01 MB, October 2006, EPA 600/R-06/126) and several peer-reviewed journal articles. The manual provides background and a catalog of procedures that can be used to assess the health of headwater streams. The manual and journal articles provide guidance to states, Tribes, EPA Regions and other groups with an interest in headwater stream assessment. The published tools include information about when to use each method and how to interpret data generated by the methods. This work has also aided research on streams in areas influenced by mountaintop mining.

Publications on Headwater Streams

Publications on headwater streams in EPA's Science Inventory

  • Structural and Functional Characteristics of Natural and Constructed Channels Draining a Reclaimed Mountaintop Removal and Valley Fill Coal Mine (2010)
  • Can bryophytes be used to characterize hydrologic permanence in forested headwater streams? (2009)
  • Larval salamanders and channel geomorphology are indicators of hydrologic permanence in forested headwater streams (2009)
  • Physical indicators of hydrologic permanence in forested headwater streams (2008)
  • Comparing the extent and permanence of headwater streams from two field surveys to values from hydrologic databases and maps (2013)
  •  A validation study of a rapid field-based rating system for discriminating among flow permanence classes of headwater streams in South Carolina (2013)
  • Challenges, developments and perspectives in intermittent river ecology (2016)
  • Governance, legislation, and protection of intermittent rivers and ephemeral streams (2017)
  • Connectivity of Streams and Wetlands to Downstream Waters: A Review and Synthesis of the Scientific Evidence (Final Report) (2015)
  • "Field Operations Manual for Assessing the Hydrologic Permanence and Ecological Condition of Headwater Streams (2006)

Related Resources

  • Ecological Exposure Research on Water
  • Regional Streamflow Duration Assessment Methods

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Last updated on November 21, 2024
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