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  1. Home
  2. NPDES Permits Around the Nation

Residual Designation in the Charles River Watershed, Mystic River Watershed and Neponset River Watersheds

On this page:
  • Record of Updates on Residual Designation Authority Activities in the Charles, Mystic, and Neponset River Watersheds
  • Petitions to Designate Certain Properties in the Charles River Watershed, Mystic River Watershed and Neponset River Watershed
  • EPA's RDA Determination for the Charles River, Mystic River and Neponset River Watersheds
  • Notice of Preliminary Designation of Certain Stormwater Discharges in the Commonwealth of Massachusetts and Notice of Availability of Draft Permit Under the National Pollutant Discharge Elimination System of the Clean Water Act
  • Resources
    • What is RDA? Video Series
    • Parcel-Level Interactive Map
    • Information Fact Sheets and Translations
    • Municipal-Specific Fact Sheets
    • Parcel-Level Watershed Analyses Reports
    • Frequently Asked Questions
    • Stakeholder Outreach for the Charles River, Mystic River and Neponset River Watershed
  • More Information

Record of Updates on Residual Designation Authority Activities in the Charles, Mystic, and Neponset River Watersheds

  • 2025 Updates
  • 2024 Updates
  • 2023 Updates

Petitions to Designate Certain Properties in the Charles River Watershed, Mystic River Watershed and Neponset River Watershed

On May 9, 2019, the Conservation Law Foundation (CLF) and the Charles River watershed Association (CRWA) submitted to the Regional Administrator of EPA Region 1 a "Petition for a Determination that Certain Commercial, Industrial, Institutional, and Multi-Family Residential Property Dischargers Contribute to Water Quality Standards Violations in the Charles River watershed, Massachusetts, and that NPDES Permitting of Such Properties is Required." On August 24, 2020, CLF followed this submission with two additional petitions requesting the same residual designations for two other watersheds in Massachusetts: the Mystic River watershed and the Neponset River watershed. The three petitions call for "a determination pursuant to 40 C.F.R. § 122.26(f)(2) that discharges of stormwater that are not currently subject to direct permitting by EPA from privately owned commercial, industrial, institutional, and multi-family residential real properties of one acre or greater" in the Charles River, Mystic River, and Neponset River watersheds "contribute to violations of water quality standards" in the Charles River and Boston Harbor, of which the Mystic River watershed is a sub-basin, and (3) the Neponset River, "and require permits under the National Pollutant Discharge Elimination System ('NPDES')." The petitions can be found here:

  • Charles River Watershed RDA Petition (pdf) (5.91 MB, May 9, 2019)
  • Mystic River Watershed RDA Petition (pdf) (334.67 KB, August 24, 2020)
  • Neponset River Watershed RDA Petition (pdf) (294.82 KB, August 24, 2020)

EPA's RDA Designation for the Charles River, Mystic River and Neponset River Watersheds

On September 14, 2022, EPA exercised its residual designation authority in response to the water quality impacts caused by stormwater discharges in all three watersheds as well as responding to the petitions received for the three watersheds. EPA's action will supplement a watershed-wide approach that already includes significant decades-long investments by municipalities to comply with their Municipal Separate Storm Sewer (MS4) permits; wastewater treatment plant upgrades in the region, including the creation of the new Deer Island treatment plant; the near-elimination of combined sewer overflows (CSOs); and intensive efforts to find and eliminate illicit discharges of sewage into stormwater systems. Cities and towns in these three watersheds have made significant efforts to reduce phosphorus in municipal stormwater and are subject to permits that will require them to do much more in coming years. A significant portion of the phosphorus load also comes directly from privately-owned or unregulated sources, and residual designation could provide a mechanism to reduce the load from these sources, complementing the work municipalities are doing on municipal property under their MS4 permits.

More information is below:

  • EPA Designation and Attachments (pdf) (7.03 MB)
  • EPA Press Release
  • Letter from EPA to the Conservation Law Foundation (pdf) (181.88 KB, September 23, 2022)

Notice of Preliminary Designation of Certain Stormwater Discharges in the Commonwealth of Massachusetts and Notice of Availability of Draft Permit Under the National Pollutant Discharge Elimination System of the Clean Water Act

THE PUBLIC COMMENT PERIOD FOR BOTH OF THESE PROPOSED ACTIONS IS CLOSED AS OF 11:59 PM MARCH 17, 2025.

The Environmental Protection Agency ("EPA") provided notice of two proposed actions.

The first action is the Preliminary Designation of certain stormwater discharges from commercial, industrial, and institutional properties with one acre or more of impervious surface in the Charles, Neponset, and Mystic River watersheds in Massachusetts for regulation under the Clean Water Act's ("CWA") National Pollutant Discharge Elimination System ("NPDES") permitting program.

EPA Region 1 is concurrently providing notice of availability of a draft NPDES General Permit for Private Commercial Industrial, and Institutional Stormwater Discharges in the Charles, Mystic, and Neponset River Watersheds in Massachusetts ("Draft CII GP").

More information about the Preliminary Designation and Draft Permit.

Resources

What is RDA? Video Series

English

  • Webinar 1 – Introduction to Stormwater
  • Webinar 2 – What is Green Infrastructure
  • Webinar 3 – EPA Stormwater Permits
  • Webinar 4 – How to comment on an EPA Permit

Spanish

  • Webinar 1 – Introducción a las aguas de escorrentía
  • Webinar 2 – ¿Qué es la Infraestructura Verde?
  • Webinar 3 – Permisos de la EPA para aguas de escorrentía
  • Webinar 4 – Cómo ofrecer comentarios sobre un permiso de la EPA

Parcel-Level Interactive Map

Residual Designation Authority (RDA) Parcel-Level Interactive Mapping Tool

Information Fact Sheets and Translations

  • RDA General Information: Understanding the Impact of Residual Designation Authority Permits on your Community (pdf) (669.12 KB, June 2024)
    • RDA Factsheet: Arabic Translation (pdf) (332.32 KB, July 2024)
    • RDA Factsheet: Brazilian Portuguese Translation (pdf) (353.99 KB, July 2024)
    • RDA Factsheet: Cantonese Translation (pdf) (430.89 KB, July 2024)
    • RDA Factsheet: French Translation (pdf) (338.73 KB, July 2024)
    • RDA Factsheet: Haitian Creole Translation (pdf) (352.21 KB, July 2024)
    • RDA Factsheet: Italian Translation (pdf) (358.42 KB, July 2024)
    • RDA Factsheet: Russian Translation (pdf) (392.24 KB, July 2024)
    • RDA Factsheet: Spanish Translation (pdf) (355.79 KB, July 2024)
    • RDA Factsheet: Vietnamese Translation (pdf) (375.14 KB, July 2024)

Municipal-Specific Fact Sheets

  • Municipal-Specific Technical Fact Sheets

Parcel-Level Watershed Analyses Reports

  • Parcel-level Analysis for the Mystic River Watershed (pdf) (5.08 MB, November 13, 2023)
  • Parcel-level Analysis for the Neponset River Watershed (pdf) (4.82 MB, November 13, 2023)
  • Updated Parcel-level Analysis for the Charles River Watershed (pdf) (3.5 MB, October 1, 2024)

Frequently Asked Questions

  • Questions on Permit Implementation (pdf) (96.43 KB, May 2024)
  • FAQ on RDA (March 2024) (pdf) (184.83 KB)

Stakeholder Outreach for the Charles River, Mystic River and Neponset River Watersheds

Throughout 2024, EPA hosted several informational sessions with a range of stakeholders to provide some background on the residual designation permit development process and to highlight the necessary reductions in phosphorus and other pollutants for the Charles, Mystic and Neponset River watersheds. Those stakeholder sessions included:

  • May 15th, 2024: Metropolitan Area Planning Council (pdf) (1.68 MB)
  • April 24th, 2024: Presentation to MA Congressional Staff (pdf) (2.06 MB)
  • April 1st, 2024: Presentation to the Association of Independent Colleges and Universities Massachusetts and Massachusetts Health and Hospital Association RDA Presentation (pdf) (1.52 MB)
  • March 22nd, 2024: Presentation to NAIOP/495 Partnership RDA Presentation (pdf) (1.65 MB)
  • March 14th, 2024: Presentation to the Mystic River Watershed Association RDA Presentation (pdf) (2.48 MB)
  • March 7th, 2024: Presentation to the Charles River Watershed Association (pdf) (2.45 MB)
  • February 28th, 2024: Presentation to the Massachusetts River Alliance (pdf) (2.63 MB)
  • January 17th, 2024: Presentation to the Neponset River Watershed Association (pdf) (1.66 MB)

EPA also conducted stakeholder meetings that focused on a set of specific questions about permit implementation challenges. These questions and a summary report of the comments from the focus groups is below:

  • Questions on Permit Implementation (pdf) (96.43 KB, May 2024)
  • 2024 Focus Group Summary Report (pdf) (464.61 KB, June 30, 2024)

Stakeholder Outreach Prior to 2024

  • Letter from 495/MetroWest Partnership to EPA, Region 1 (pdf) (3.92 MB, January 18, 2023)
  • Charles River Stormwater Permitting Residual Designation Authority Focus Group Sessions Summary (pdf) (332.89 KB, February 8, 2021)

More information

For additional information contact: R1.RDA@epa.gov

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Last updated on March 18, 2025
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