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  2. San Joaquin Valley

Actions for Cleaner Water

The San Joaquin Valley depends on both groundwater and surface waters, including rivers, creeks, canals and more than 575 community water systems.

On this page:
  • Safer Drinking Water
  • A Healthier San Joaquin River

Safer Drinking Water

Access to safe drinking water is a major challenge for small communities. In 2012, EPA and the California Department of Public Health (CDPH) convened a series of stakeholder and inter-agency meetings to identify the needs of small systems that fail to meet safe drinking water standards. More than 50% of them – 140 systems – were in the San Joaquin Valley. The state agency’s goal is to bring at least 21 systems in the valley into compliance each year for the next three years.

EPA is helping to meet that goal by providing essential funding for technical assistance to these small drinking water systems through nonprofits like the California Rural Water Association. In partnership with CDPH, local stakeholders, and four nonprofits, EPA continues to work with these communities to identify barriers to compliance and develop long-term sustainable solutions.

EPA has also worked with communities to improve water quality by providing funding for education and training to more than 200 valley residents about preventing pollution of drinking water.

A Healthier San Joaquin River

Some of the most promising signs of progress to protect surface waters have recently come from the San Joaquin River. First, a 50-mile stretch that formerly went dry part of every year due to dams and water diversions was re-watered. In November 2012, the state Department of Fish and Wildlife captured adult salmon and trucked them upstream to spawning areas, in hopes of restoring a San Joaquin salmon run for the first time in more than 60 years.

EPA is participating in the review of modifications to water quality standards in the Sacramento-San Joaquin Delta proposed by the State Water Resources Control Board. The first phase of the new standards will address freshwater flows for the protection of aquatic life in the lower San Joaquin River and three of its tributaries, the Stanislaus, Merced, and Tuolumne Rivers.

In June 2012, EPA awarded $59,000 in grant funds to Revive the San Joaquin, a nonprofit in Fresno, to establish a citizen-based water quality monitoring and pollution prevention education program in the city’s 15 miles of neighborhoods lining the riverbank. This effort is now underway.

Also notable is the success of a 20-year effort to reduce levels of the pesticide diazinon in two stretches of the river, totaling 17 miles. Diazinon was being used on orchards, and runoff was washing the pesticide into the river.

Learn More:
  • Success Story: Stakeholders Cooperate to Reduce Diazinon in the San Joaquin River (pdf) (246.44 KB, 2013)
    Enacting regulations, implementing biological controls and cover crops, and maintaining natural areas and hedgerows in orchards reduced organophosphate pesticides in runoff.
  • Reducing Selenium in the Grasslands Watershed in the San Joaquin Basin (pdf) (563.9 KB, 2011)
    EPA Fact Sheet with information on the reduction of selenium in the Grasslands Watershed in the San Joaquin Basin.

Since 1994, a partnership including growers, the University of California, state agencies, and EPA have collaborated on the Biologically Integrated Orchard System (BIOS) project. Participating growers reduced their use of chemical pesticides, replacing them with biological controls, cover crops, and habitat for beneficial insects. By 2010, diazinon levels had dropped dramatically, and these stretches of the San Joaquin were removed from the state’s list of waters impaired by diazinon.


Related Content

  • Water Quality Standards
  • Nitrogen and Phosphorus from Manure
  • Nutrient Pollution
  • Water Quality Monitoring
Map of San Joaquin Valley with watersheds marked and highlighted priority areas including: Lodi, Stockton, Modesto, Merced, Fresno, Bakersfield, and others.
San Joaquin Valley Watershed Priorities Map | Click to enlarge
Chinook Salmon in a stream
Chinook Salmon

San Joaquin Valley

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Contact Us about the San Joaquin Valley
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Last updated on January 10, 2025
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